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astir package
astir.data package
astir.models package
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C
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R
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T
A
assign_celltype_hierarchy() (astir.Astir method)
Astir (class in astir)
astir.data
module
astir.models
module
AstirModel (class in astir.models)
C
CellStateModel (class in astir.models)
CellTypeModel (class in astir.models)
D
diagnostics() (astir.models.CellStateModel method)
(astir.models.CellTypeModel method)
diagnostics_cellstate() (astir.Astir method)
diagnostics_celltype() (astir.Astir method)
F
fit() (astir.models.AstirModel method)
(astir.models.CellStateModel method)
(astir.models.CellTypeModel method)
fit_state() (astir.Astir method)
fit_type() (astir.Astir method)
forward() (astir.models.StateRecognitionNet method)
(astir.models.TypeRecognitionNet method)
from_anndata_yaml() (in module astir.data)
from_csv_dir_yaml() (in module astir.data)
from_csv_yaml() (in module astir.data)
from_loompy_yaml() (in module astir.data)
G
get_assignment() (astir.models.AstirModel method)
get_cell_names() (astir.data.SCDataset method)
get_cellstates() (astir.Astir method)
get_celltype_probabilities() (astir.Astir method)
get_celltypes() (astir.Astir method)
(astir.models.CellTypeModel method)
get_classes() (astir.data.SCDataset method)
get_correlations() (astir.models.CellStateModel method)
get_data() (astir.models.AstirModel method)
get_design() (astir.data.SCDataset method)
get_dtype() (astir.data.SCDataset method)
get_exprs() (astir.data.SCDataset method)
get_exprs_df() (astir.data.SCDataset method)
get_features() (astir.data.SCDataset method)
get_final_mu_z() (astir.models.CellStateModel method)
get_hierarchy_dict() (astir.Astir method)
get_losses() (astir.models.AstirModel method)
get_marker_mat() (astir.data.SCDataset method)
get_mu() (astir.data.SCDataset method)
get_mu_init() (astir.data.SCDataset method)
get_n_cells() (astir.data.SCDataset method)
get_n_classes() (astir.data.SCDataset method)
get_n_features() (astir.data.SCDataset method)
get_recognet() (astir.models.CellStateModel method)
(astir.models.CellTypeModel method)
get_scdataset() (astir.models.AstirModel method)
get_sigma() (astir.data.SCDataset method)
get_state_dataset() (astir.Astir method)
get_state_losses() (astir.Astir method)
get_state_model() (astir.Astir method)
get_state_run_info() (astir.Astir method)
get_type_dataset() (astir.Astir method)
get_type_losses() (astir.Astir method)
get_type_model() (astir.Astir method)
get_type_run_info() (astir.Astir method)
get_variables() (astir.models.AstirModel method)
I
is_converged() (astir.models.AstirModel method)
L
load_hdf5() (astir.models.CellStateModel method)
(astir.models.CellTypeModel method)
load_model() (astir.Astir method)
M
module
astir.data
astir.models
N
normalize() (astir.Astir method)
(astir.data.SCDataset method)
P
plot_clustermap() (astir.models.CellTypeModel method)
predict() (astir.models.CellTypeModel method)
predict_cellstates() (astir.Astir method)
predict_celltypes() (astir.Astir method)
R
rescale() (astir.data.SCDataset method)
S
save_models() (astir.Astir method)
SCDataset (class in astir.data)
state_to_csv() (astir.Astir method)
StateRecognitionNet (class in astir.models)
T
training (astir.models.StateRecognitionNet attribute)
(astir.models.TypeRecognitionNet attribute)
type_clustermap() (astir.Astir method)
type_to_csv() (astir.Astir method)
TypeRecognitionNet (class in astir.models)
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